Background: Molecular identification based on microsatellite loci is an important technology to improve the commercial
breeding of the moth orchid. There are more than 30,000 cultivars have been enrolled at the Royal Horticultural
Society (RHS). In this study, genomic microsatellite primer sets were developed from Phalaenopsis aphrodite
subsp. formosana to further examine the transferability of across 21 Phalaenopsis species.
Methods and results: Twenty-eight polymorphic microsatellite markers were obtained using the magnetic bead
enrichment method, with high transferability of the 21 species of the genus Phalaenopsis, especially in the subgenus
Phalaenopsis. The 28 newly developed polymorphic microsatellite markers with high polymorphism information content
values. The best and second fit grouping (K) are inferred as two and four by the ΔK evaluation in the assignment
test. This result indicates that these microsatellite markers are discernible to subgenus Phalaenopsis.
Conclusions: Our results indicate that these new microsatellite markers are useful for delimiting species within
genus Phalaenopsis. As expected, the genetic relationships between species of subgenus Phalaenopsis can be well
distinguished based on the assignment test. These molecular markers could apply to assess the paternity of Phalaenopsis
as well as investigating hybridization among species of genus Phalaenopsis.
Ya‑Zhu Ko;Huei‑Chuan Shih;Chi‑Chu Tsai;Hsing‑Hua Ho Pei‑Chun Liao;Yu‑Chung ChiangScreening transferable microsatellite markers across genus Phalaenopsis (Orchidaceae).pdf
